You can uninstall or removes an installed gnuboy-sdl package itself from Ubuntu 16.04 LTS (Xenial Xerus) through the terminal,
$ sudo apt-get remove gnuboy-sdl
If you would like to remove gnuboy-sdl and it's dependent packages which are no longer needed from Ubuntu,
$ sudo apt-get remove --auto-remove gnuboy-sdl
If you use with purge options to gnuboy-sdl package all the configuration and dependent packages will be removed.
$ sudo apt-get purge gnuboy-sdl
If you use purge options along with auto remove, will be removed everything regarding the package, It's really useful when you want to reinstall again.
$ sudo apt-get purge --auto-remove gnuboy-sdl