phyml software package provides Phylogenetic estimation using Maximum Likelihood, you can install in your Ubuntu 14.04 LTS (Trusty Tahr) by running the commands given below on the terminal,
$ sudo apt-get update $ sudo apt-get install phyml
phyml is installed in your system.
Make ensure the phyml package were installed using the commands given below,
$ sudo dpkg-query -l | grep phyml *
You will get with phyml package name, version, architecture and description in a table
| Distro | Ubuntu 14 04 lts trusty tahr |
| Section | Science |
| Package | phyml |
| Version | 2:20120412-2 |
| Description | Phylogenetic estimation using Maximum Likelihood |
| Sub Section | Science |